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Dr Ebenezer Foster-Nyarko

Research Fellow

United Kingdom

I am a Research Fellow in Professor Kathryn Holt's group at the London School of Hygiene and Tropical Medicine, UK. My current research involves undertaking high-quality computational genomics-based research to elucidate the genetic determinants of AMR and virulence in Klebsiella pneumonia and contributing to research aimed at improving phenotype prediction from genotypic data to enhance genomic surveillance of AMR and virulence in K. pneumoniae. I have a PhD in microbial genomics (Quadram Institute Bioscience and Norwich Medical School, University of East Anglia, Norwich, UK). My PhD research focused on understanding the within-host diversity of Escherichia coli in the vertebrate gut.

Before my PhD, I worked as a Scientific Officer at the Medical Research Council Unit the Gambia at LSHTM, where I was involved in invasive bacterial disease surveillance in the WHO Regional Co-ordinating Centre headed by Professor Martin Antonio.

Aside from my research, I am honoured to serve as the Regional Coordinator for PulseNET Africa, a regional hub of PulseNET International. I also chair the African Pathogen Initiative's Foodborne Diseases Technical Focus Group, helping to shape the future of foodborne disease genomic surveillance in Africa.

Affiliations

Department of Infection Biology
Faculty of Infectious and Tropical Diseases

Research

Microbial genomics, Antimicrobial resistance, Bioinformatics, Klebsiella pneumoniae
Research Area
Bacteria
Drug resistance
Surveillance
Bacteriology
Genomics
Microbiology

Selected Publications

Molecular Epidemiology and AMR Perspective of Diarrhoeagenic Escherichia coli in Africa: A Systematic Review and Meta-analysis.
Kalule, JB; Bester, LA; Banda, DL; Derra, FA; Msefula, C; Smith, AM; Ajayi, A; Kumburu, H; Kwenda, G; Yamba, K; Mwaba, J; Fakim, YJ; Sithole, N; Kanzi, AM; Njage, PM K; Chikuse, F; Tessema, SK; Smith, SI; FOSTER-NYARKO, E;
2024
Journal of epidemiology and global health
Geographical migration and fitness dynamics of Streptococcus pneumoniae.
Belman, S; Lefrancq, N; Nzenze, S; Downs, S; Du Plessis, M; Lo, SW; Global Pneumococcal Sequencing Consortium,; McGee, L; Madhi, SA; Von Gottberg, A; Bentley, SD; Salje, H;
2024
Nature
Detection of hidden antibiotic resistance through real-time genomics.
Sauerborn, E; Corredor, NC; Reska, T; Perlas, A; Vargas da Fonseca Atum, S; Goldman, N; Wantia, N; Prazeres da Costa, C; FOSTER-NYARKO, E; Urban, L;
2024
Nature communications
Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana.
Mills, RO; Dadzie, I; Le-Viet, T; Baker, DJ; Addy, HP K; Akwetey, SA; Donkoh, IE; Quansah, E; Semanshia, PS; Morgan, J; Mensah, A; Adade, NE; Ampah, EO; Owusu, E; Mwintige, P; Amoako, EO; SPADAR, A; HOLT, KE; FOSTER-NYARKO, E;
2024
The Journal of antimicrobial chemotherapy
Molecular Epidemiology of Diarrhoeagenic<i>Escherichia coli</i>in Africa: A Systematic Review and Meta-Analysis
Kalule, JB; Bester, LA; Banda, DL; Derra, FA; Chikuse, F; Tessema, SK; FOSTER-NYARKO, E;
2023
Cold Spring Harbor Laboratory
Corrigendum: 'Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae'.
FOSTER-NYARKO, E; Cottingham, H; Wick, RR; Judd, LM; Lam, MM C; Wyres, KL; Stanton, TD; Tsang, KK; David, S; Aanensen, DM; Brisse, S; HOLT, KE;
2023
Microbial genomics
Acquisition of a large virulence plasmid (pINV) promoted temperature-dependent virulence and global dispersal of O96:H19 enteroinvasive Escherichia coli.
Miles, SL; Torraca, V; DYSON, ZA; López-Jiménez, AT; FOSTER-NYARKO, E; Lobato-Márquez, D; Jenkins, C; HOLT, KE; MOSTOWY, S;
2023
mBio
Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae
FOSTER-NYARKO, E; HOLT, KE; Cottingham, H; Wick, R; Judd, LM; Lam, M; Wyres, KL; Stanton, T; Tsang, KK; David, S; Bridel, S; Palma, F; Aanensen, DM; Brisse, S;
2023
Figshare
Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes
Cotton, S; McHugh, MP; Dewar, R; Haas, JG; Templeton, K; COVID-19 Genomics UK (COG-UK) Consortium,;
2023
The Journal of hospital infection
Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae.
FOSTER-NYARKO, E; Cottingham, H; Wick, RR; Judd, LM; Lam, MM C; Wyres, KL; STANTON, TD; TSANG, KK; David, S; Aanensen, DM; Brisse, S; HOLT, KE;
2023
Microbial genomics
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