Publications

covidregionaldata: Subnational data for COVID-19 epidemiology.

Palmer, J; SHERRATT, K; Martin-Nielsen, R; Bevan, J; GIBBS, H; Group, C; FUNK, S; ABBOTT, S;

2021

Journal of Open Source Software, (2021).6 63 10.21105/joss.03290.

Supplementary material from "Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study".

Lovell-Read, FA; FUNK, S; Obolski, U; Donnelly, CA; Thompson, RN;

2021

, The Royal Society (2021).

EpiNow2: Estimate real-time case counts and time-varying epidemiological parameters.

ABBOTT, S; FUNK, S;

2021

(2021). 10.5281/zenodo.3957489.

Real-time estimation of the time-varying transmission advantage of Omicron in England using S-Gene Target Status as a Proxy.

ABBOTT, S; Sherratt, K; FUNK, S;

2021

(2021).

The impact of population-wide rapid antigen testing on SARS-CoV-2 prevalence in Slovakia.

PAVELKA, M; Van-Zandvoort, K; ABBOTT, S; SHERRATT, K; Majdan, M; CMMID COVID-19 working group,; Inštitút Zdravotných Analýz,; Jarčuška, P; Krajčí, M; FLASCHE, S; FUNK, S;

2021

Science (New York, N.Y.), (2021).372 6542 10.1126/science.abf9648.

Temperature modulates immune gene expression in mosquitoes during arbovirus infection.

Wimalasiri-Yapa, BM C R; Barrero, RA; Stassen, L; Hafner, LM; McGraw, EA; Pyke, AT; Jansen, CC; Suhrbier, A; YAKOB, L; Hu, W; Devine, GJ; Frentiu, FD;

2021

Open Biology, (2021).11 1 10.1098/rsob.200246.

A global agenda for older adult immunization in the COVID-19 era: A roadmap for action.

Privor-Dumm, LA; Poland, GA; Barratt, J; Durrheim, DN; Deloria Knoll, M; Vasudevan, P; JIT, M; Bonvehí, PE; Bonanni, P; International Council on Adult Immunization,;

2021

Vaccine, (2021).39 37 10.1016/j.vaccine.2020.06.082.

Comparative effectiveness of allocation strategies of COVID-19 vaccines and antivirals against emerging SARS-CoV-2 variants of concern in East Asia and Pacific region.

Leung, K; JIT, M; Leung, G; Wu, J;

2021

medRxiv (2021). 10.1101/2021.10.20.21265245.

Modeling the effect of vaccination on selection for antibiotic resistance in Streptococcus pneumonia e.

DAVIES, NG; FLASCHE, S; JIT, M; ATKINS, KE;

2021

Science translational medicine, (2021).13 606 10.1126/scitranslmed.aaz8690.

Real-time monitoring of COVID-19 dynamics using automated trend fitting and anomaly detection.

JOMBART, T; Ghozzi, S; Schumacher, D; Taylor, TJ; LECLERC, QJ; JIT, M; FLASCHE, S; Greaves, F; Ward, T; EGGO, RM; NIGHTINGALE, E; MEAKIN, S; BRADY, OJ; Centre for Mathematical Modelling of Infectious Di,; MEDLEY, GF; Höhle, M; EDMUNDS, WJ;

2021

Philosophical transactions of the Royal Society of London. Series B, Biological sciences, (2021).376 1829 10.1098/rstb.2020.0266.