Publications

Emergence of multidrug-resistant Mycobacterium tuberculosis of the Beijing lineage in Portugal and Guinea-Bissau: a snapshot of moving clones by whole-genome sequencing.

Perdigão, J; Silva, C; Maltez, F; Machado, D; Miranda, A; Couto, I; Rabna, P; Florez de Sessions, P; PHELAN, J; Pain, A; McNerney, R; HIBBERD, ML; Mokrousov, I; CLARK, TG; Viveiros, M; Portugal, I;

2020

EMERGING MICROBES & INFECTIONS, (2020).9 1 10.1080/22221751.2020.1774425.

Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali.

Senghore, M; Diarra, B; Gehre, F; Otu, J; Worwui, A; Muhammad, AK; Kwambana-Adams, B; Kay, GL; Sanogo, M; Baya, B; Orsega, S; Doumbia, S; Diallo, S; De Jong, BC; Pallen, MJ; ANTONIO, M;

2020

Scientific reports, (2020).10 1 10.1038/s41598-019-56001-0.

GeneMates: an R package for Detecting Horizontal Gene Co-transfer between Bacteria Using Gene-gene Associations Controlled for Population Structure.

Wan, Y; Wick, RR; Zobel, J; Ingle, DJ; Inouye, M; HOLT, KE;

2020

bioRxiv preprint (2020). 10.1101/2020.02.29.970970.

Antimicrobial Resistance in Gram-negative bacteria from Urinary Specimens: a study of prevalence, risk factors and molecular mechanisms of resistance (ARGUS) in Zimbabwe - a study protocol.

OLARU, ID; YEUNG, S; FERRAND, RA; STABLER, R; Chonzi, P; MABEY, D; HOPKINS, H; BRADLEY, J; Masunda, KP E; Munyati, S; KRANZER, K;

2020

Wellcome Open Res, (2020).5, 10.12688/wellcomeopenres.15977.1.

Filling the gaps in global antimicrobial resistance research/surveillance.

Furuya-Kanamori, L; YAKOB, L;

2020

BMC infectious diseases, (2020).20 1 10.1186/s12879-019-4708-6.

Views of health care professionals and policy-makers on the use of surveillance data to combat antimicrobial resistance.

AL-HABOUBI, M; Trathen, A; BLACK, N; EASTMURE, E; MAYS, N;

2020

BMC Public Health, (2020).20 1 10.1186/s12889-020-8383-8.

Serotype Profile of Nasopharyngeal Isolates of Streptococcus pneumoniae Obtained from Children in Burkina Faso before and after Mass Administration of Azithromycin.

Hema-Ouangraoua, S; Zongo, I; Kabore, NF; Frédéric, N; Yerbanga, RS; Tinto, H; Compaore, YD; Kuepfer, I; CHANDRAMOHAN, D; GREENWOOD, B; Ouedraogo, JB;

2020

The American journal of tropical medicine and hygiene, (2020).103 2 10.4269/ajtmh.19-0944.

An interdisciplinary mixed-methods approach to developing antimicrobial stewardship interventions: Protocol for the Preserving Antibiotics through Safe Stewardship (PASS) Research Programme.

Shallcross, L; Lorencatto, F; Fuller, C; Tarrant, C; West, J; Traina, R; Smith, C; Forbes, G; Crayton, E; Rockenschaub, P; Dutey-Magni, P; Richardson, E; FRAGASZY, E; Michie, S; Hayward, A; PASS Research Group,;

2020

Wellcome open research, (2020).5, 10.12688/wellcomeopenres.15554.1.

Genomic diversity of<i>Escherichia coli</i>isolates from non-human primates in the Gambia.

FOSTER-NYARKO, E; Alikhan, N-F; Ravi, A; Thilliez, G; Thomson, N; Baker, D; Kay, G; Cramer, JD; O'Grady, J; ANTONIO, M; Pallen, MJ;

2020

Biorxiv (2020). 10.1101/2020.02.29.971309.

Tuberculosis infection prevention and control: why we need a whole systems approach.

Kielmann, K; KARAT, AS; Zwama, G; Colvin, C; Swartz, A; Voce, AS; Yates, TA; MacGregor, H; MCCREESH, N; Kallon, I; VASSALL, A; GOVENDER, I; SEELEY, J; GRANT, AD;

2020

Infectious diseases of poverty, (2020).9 1 10.1186/s40249-020-00667-6.